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Merge nf-core template 4.0.2 #454

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jonasscheid merged 6 commits into
nf-core:devfrom
jonasscheid:template-merge-402
May 22, 2026
Merged

Merge nf-core template 4.0.2 #454
jonasscheid merged 6 commits into
nf-core:devfrom
jonasscheid:template-merge-402

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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/mhcquant branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

nf-core-bot and others added 4 commits April 30, 2026 13:33
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
@jonasscheid jonasscheid changed the title Merge nf-core template 4.0.2 into dev Merge nf-core template 4.0.2 May 21, 2026
jonasscheid and others added 2 commits May 21, 2026 16:05
… lint

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
@jonasscheid jonasscheid marked this pull request as ready for review May 21, 2026 17:30
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@charles-plessy charles-plessy left a comment

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Looks good to me.

@jonasscheid jonasscheid merged commit 33e95d5 into nf-core:dev May 22, 2026
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3 participants